PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 454aa    MW: 51109.3 Da    PI: 4.941
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48190.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34231152103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d++l+ +isw ++g sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k+++++         weF ++ F++gkk+ll++i+
    KHN48190.1  23 FLSKTFDLVDDPTLDPIISWGSTGFSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFFNEAFQRGKKHLLKNIQ 110
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
    KHN48190.1 111 RRRSS 115
                   **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.02E-3319112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-5419112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.8E-3620112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3023112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MNPNDANSPK PLEILQMNPV PPFLSKTFDL VDDPTLDPII SWGSTGFSFV VWDPLEFARI  60
VLPRHFKHNN FSSFVRQLNT YGFRKIDTDK WEFFNEAFQR GKKHLLKNIQ RRRSSQSQQV  120
GSYIGIECST EAGRSDVEIE IERLRKERTM LMEEVVDLKQ EQRRMAHRAG EVNQRLQSTE  180
QRQKQMVSFL VKLIQNPAFL ARLRHEEQKE IDSPRVVRKF VKQHQHETGT AETLQEGQIV  240
RYQHDWRNIG MSSETPKLSP VSIEQSPHYL SQGLAGEVSV GAEDLTAQIE NIVSNDLAAV  300
HGITVSQEIM IGEGLSSFGA EDPLFKGKSV MSPILEVPPE YFASFPEGLT KGKDFQDFSA  360
LGTEGMIKLE DIWDSGLNVS GAASGSGNEL WSNHVNYEEF PEFGVTSGMS DSDIWDIGLG  420
SLGIDKWPTD EPSLGETNGQ AGQPKEDRPK NFGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-242011717125Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541445.10.0PREDICTED: heat stress transcription factor A-3-like
TrEMBLA0A0B2STJ00.0A0A0B2STJ0_GLYSO; Heat stress transcription factor A-3
TrEMBLI1LZF50.0I1LZF5_SOYBN; Uncharacterized protein
STRINGGLYMA13G21490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.18e-96heat shock transcription factor A3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]